Atmospheric Science


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Anomalous stomate forming cells in Arabidopsis thaliana. Source: Fred Sack

Stomata are minute aperture structures on plants found typically on the outer leaf skin layer, also known as the epidermis. They consist of two specialized cells, called guard cells that surround a tiny pore called a stoma.

The word stomata means mouth in Greek because they allow communication between the internal and external environments of the plant. Their main function is to allow gases such as carbon dioxide, water vapor and oxygen to move rapidly into and out of the leaf.

Stomata are found on all above-ground parts of plants, including the petals of flowers, petioles, soft herbaceous stems and leaves. They are formed during the initial stages of the development of these various plant organs and therefore reflect the environmental conditions under which they grew.

caption Figure 1: Stomata of Tall fescue grasses.


Stomatal density, size and shape

Stomatal density refers to the number of stomata per square millimeter. Typical densities can vary from 100 to 1000 depending on the plant species and the environmental conditions during development. More stomata are made on plant surfaces under higher light, lower atmospheric carbon dioxide concentrations and moist environments. Grasses typically have lower stomatal densities than deciduous trees. The size and shape of stomata also vary with different plant species and environmental conditions. For example, grasses have guard cells that resemble slender dumbbells whereas trees and shrubs have guard cells that resemble kidney beans.

Physiological function of stomata

Leaves are the main "food manufacturing" organs of plants. They make food from carbon dioxide and water in the presence of light during a process called photosynthesis. As stomata open in the presence of sunlight, carbon dioxide will diffuse into the leaf as it is converted to sugars through photosynthesis inside the leaf. At the same time, water vapor will exit the leaf along a diffusive gradient through the stomata to the surrounding atmosphere through the process of transpiration. Consequently, plants face the dilemma of taking up carbon dioxide while losing water vapor through their stomata. If this water loss remains unchecked, they can deplete their water reserve. This depletion can become catastrophic to the physiological functioning of the plant given that is the most essential solvent in which biochemical and growth processes occur. Based on Darwinian principles, it is presumed that selective adaptation has driven plants to acquire characteristics which enable them to grow more rapidly without diminishing the probability of survival. If plants have not acquired the characteristics to withstand changes in water availability in their growth environment, plants may exacerbate their water shortage by not regulating the size of their stomatal apertures in an optimal manner and may fail to survive when water availability declines.

Optimal size of stomatal apertures

The Optimisation Theory, first proposed by Ian Cowan and Graham Farquhar (1977) suggests that the gas exchange of a plant is optimal if the plant is maximizing photosynthesis at a given average rate of transpiration. This ratio of photosynthesis to transpiration defines the instantaneous water-use efficiency (WUE) of the plant. The WUE of the leaf, when compared to economic principles, can be considered to be analogous to the interest rate on an invested resource. The invested resource in this case is water transpired, while the interest is the carbon gained through photosynthesis. The optimal stomatal aperture size is one in which the interest rate, WUE, is maximized as the environmental conditions change.

Stomatal apertures will typically vary in response to changes in light intensity, saturation deficit of ambient water vapor and soil moisture availability. As stomatal aperture size changes, rates of photosynthesis and transpiration will vary because the pore size will provide a corresponding resistance to the diffusion of CO2 into and H2O out of the leaf. The inverse of this resistance can be calculated as the conductance to these two gases across a leaf surface.

Stomatal conductance

Plant biologists typically measure stomatal conductance using a specialized instrument called an IRGA (Infra Red Gas Analyzer).

caption Figure 2: Leaf chamber attached to Infra red gas analyzer connected to computer console

This instrument allows one to clamp a leaf into a chamber and the relative mole fractions of CO2 and water vapor entering and leaving the chamber are monitored over time. The leaf touches a temperature thermocouple inside the chamber so that leaf temperature can be monitored in conjunction with air temperature that exits the chamber. The leaf temperature is used to determine the saturated molar concentration of water vapor inside the leaf intercellular air spaces. The resistance to the diffusion of water vapor from inside the leaf to the air stream passing over the leaf is calculated from the difference between the molar concentrations of saturated water vapor inside the leaf air spaces in the air stream passing over the leaf. The resistance will increase as the stomatal aperture size decreases. The stomatal conductance to water vapor decreases as the resistance increases. Because H2O has a lighter molecular mass than CO2, water typically diffuses 1.6 times faster than CO2. The conductance to CO2 into a leaf is going to be 0.625 times the conductance to H2O out of the leaf.

As stomatal conductance declines, WUE will increase if the reduction in photosynthesis is lower than the reduction in transpiration. Plant species typically show this physiological response under mild drought stress. Under severe drought stress, the photosynthetic biochemical machinery can become damaged. As a result, WUE will decrease as stomatal conductance declines if the reduction in photosynthesis becomes larger than the reduction in transpiration.

Air pollutant uptake

Although the physiological function of stomata addresses the control of gas exchange required for plant metabolism, the gateway to the atmosphere provided by these plant structures allows the free transport of unintended gases. Air pollutants such as sulfur dioxide, carbon monoxide and oxides of nitrogen may invade the leaf through stomatal pathways.(Saxe, 1990) These alien gases have only gained significant worldwide concentrations since the mid-Holocene (and in fact, chiefly since the Industrial Revolution), when humans initiated massive emissions of these air pollutants as by-products of manufacturing and combustion. As a result many plant species experience alteration of metabolic function, often including reduction in growth rates or outright morphological change. Sometimes the effects are complex to evaluate since unrelated pathogenic effects or other stressors may be operating simultaneously in a given ecosystem, especially in locales where humans are exerting a robust presence. (Woodwell, 1989)

See also

Further reading

  • Cowan, I. R. and Farquhar, G. D. (1977). Stomatal function in relation to leaf metabolism and environment. Symposium for the Society of Experimental Biology 31:471-505.
  • Zeiger, E., Farquhar, G.D. and I.R. Cowan (Eds). Stomatal Function. (1987) Stanford University Press, Stanford, California.
  • Saxe, Henrik (1990) Air pollution, primary plant physiological responses, and diagnostic tools Department of Plant Physiology, Royal Veterinary Agricultural University, 233 pages
  • Woodwell, G.M., (1989) Biologic markers of air-pollution stress and damage in forests. National Research Council (U.S.). Committee on Biologic Markers of Air-Pollution Damage in Trees, National Research Council (U.S.). Board on Environmental Studies and Toxicology],National Academies Press, 363 pages


Swarthout, D. (2012). Stomata. Retrieved from


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Travares Heath wrote: 06-18-2012 08:02:20

Hey guys I have a quick question regarding the size of tomato plants and the average stomata size, or at least some sort of direction where I can find some info on this matter. This is a very crucial component to my research on if the stomata are actually big enough for the absorption of Titanium Dioxide nano particles. Thanks.

Kaiwalya Patil wrote: 05-12-2012 12:10:45

thts very nice for all of us...

mike bewley wrote: 04-22-2012 20:27:17

It's interesting that H2O diffuses 1.6 times faster than CO2. That is phi. The golden ratio.

mike bewley wrote: 04-22-2012 20:22:08

I found this very informative.

Tore Maras-Lindeman wrote: 03-29-2011 00:38:27

I would like to know your opinion on this paper. BOTANICAL BRIEFING Leaf Evolution: Gases, Genes and Geochemistry DAVID J. BEERLING* Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK